komet
Getting started
Create LCIdb and Train/Val/Test in different prediction scenarii
Create LCIdb and CV datasets in different prediction scenarii
Visualization in the protein space
komet : Kronecker Optimized METhod for DTI prediction
Predict drugs’ protein interaction profiles or proteins’ molecular interaction profiles with Komet and LCIdb
TP komet : practical work
Komet with Uniprot LAkernel
API
komet module
komet
Index
Index
A
|
C
|
K
|
L
|
M
|
N
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P
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R
|
S
A
add_indfasta() (in module komet)
add_indsmiles() (in module komet)
C
compute_proba() (in module komet)
compute_proba_Platt_Scalling() (in module komet)
K
komet
module
L
load_datas() (in module komet)
load_df() (in module komet)
M
make_CV_train_test() (in module komet)
make_CV_train_test_full() (in module komet)
make_CV_train_test_Orphan() (in module komet)
make_CV_train_test_unseen_drug() (in module komet)
make_CV_train_test_unseen_target() (in module komet)
make_train_test_val_S1() (in module komet)
make_train_test_val_S2() (in module komet)
make_train_test_val_S3() (in module komet)
make_train_test_val_S4() (in module komet)
make_trains_full() (in module komet)
module
komet
Morgan_FP() (in module komet)
MT_komet() (in module komet)
N
NN_ST_SVM() (in module komet)
Nystrom_X() (in module komet)
Nystrom_X_cn() (in module komet)
P
predict_drug_profile() (in module komet)
predict_protein_profile() (in module komet)
process_LCIdb() (in module komet)
R
results() (in module komet)
S
SVM_bfgs() (in module komet)