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Getting started

  • Create LCIdb and Train/Val/Test in different prediction scenarii
  • Create LCIdb and CV datasets in different prediction scenarii
  • Visualization in the protein space
  • komet : Kronecker Optimized METhod for DTI prediction
  • Predict drugs’ protein interaction profiles or proteins’ molecular interaction profiles with Komet and LCIdb
  • TP komet : practical work
  • Komet with Uniprot LAkernel

API

  • komet module
komet
  • Index

Index

A | C | K | L | M | N | P | R | S

A

  • add_indfasta() (in module komet)
  • add_indsmiles() (in module komet)

C

  • compute_proba() (in module komet)
  • compute_proba_Platt_Scalling() (in module komet)

K

  • komet
    • module

L

  • load_datas() (in module komet)
  • load_df() (in module komet)

M

  • make_CV_train_test() (in module komet)
  • make_CV_train_test_full() (in module komet)
  • make_CV_train_test_Orphan() (in module komet)
  • make_CV_train_test_unseen_drug() (in module komet)
  • make_CV_train_test_unseen_target() (in module komet)
  • make_train_test_val_S1() (in module komet)
  • make_train_test_val_S2() (in module komet)
  • make_train_test_val_S3() (in module komet)
  • make_train_test_val_S4() (in module komet)
  • make_trains_full() (in module komet)
  • module
    • komet
  • Morgan_FP() (in module komet)
  • MT_komet() (in module komet)

N

  • NN_ST_SVM() (in module komet)
  • Nystrom_X() (in module komet)
  • Nystrom_X_cn() (in module komet)

P

  • predict_drug_profile() (in module komet)
  • predict_protein_profile() (in module komet)
  • process_LCIdb() (in module komet)

R

  • results() (in module komet)

S

  • SVM_bfgs() (in module komet)

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